:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'lumpy-sv' .. highlight: bash lumpy-sv ======== .. conda:recipe:: lumpy-sv :replaces_section_title: :noindex: a general probabilistic framework for structural variant discovery :homepage: https://github.com/arq5x/lumpy-sv :license: MIT :recipe: /`lumpy-sv `_/`meta.yaml `_ .. conda:package:: lumpy-sv |downloads_lumpy-sv| |docker_lumpy-sv| :versions: .. raw:: html
0.3.1-30.3.1-20.3.1-10.3.1-00.3.0-60.3.0-50.3.0-40.3.0-30.3.0-2 ``0.3.1-3``,  ``0.3.1-2``,  ``0.3.1-1``,  ``0.3.1-0``,  ``0.3.0-6``,  ``0.3.0-5``,  ``0.3.0-4``,  ``0.3.0-3``,  ``0.3.0-2``,  ``0.3.0-1``,  ``0.3.0-0``,  ``0.2.14a-2``,  ``0.2.14a-1``,  ``0.2.14a-0``,  ``0.2.13-1``,  ``0.2.13-0``,  ``0.2.12-3``,  ``0.2.12-2``,  ``0.2.12-1``,  ``0.2.12-0``,  ``0.2.11-0`` .. raw:: html
:depends bamkit: :depends gawk: :depends htslib: :depends lumpy-sv-minimal: ``0.3.1.*`` :depends numpy: :depends pysam: :depends python: ``2.7.*`` :depends sambamba: :depends samblaster: :depends samtools: :depends util-linux: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install lumpy-sv and update with:: conda update lumpy-sv or use the docker container:: docker pull quay.io/biocontainers/lumpy-sv: (see `lumpy-sv/tags`_ for valid values for ````) .. |downloads_lumpy-sv| image:: https://img.shields.io/conda/dn/bioconda/lumpy-sv.svg?style=flat :target: https://anaconda.org/bioconda/lumpy-sv :alt: (downloads) .. |docker_lumpy-sv| image:: https://quay.io/repository/biocontainers/lumpy-sv/status :target: https://quay.io/repository/biocontainers/lumpy-sv .. _`lumpy-sv/tags`: https://quay.io/repository/biocontainers/lumpy-sv?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/lumpy-sv/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/lumpy-sv/README.html