:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'mantis_pfa' .. highlight: bash mantis_pfa ========== .. conda:recipe:: mantis_pfa :replaces_section_title: :noindex: Consensus\-driven protein function annotation tool :homepage: https://github.com/PedroMTQ/Mantis :license: MIT / MIT :recipe: /`mantis_pfa `_/`meta.yaml `_ :links: biotools: :biotools:`mantis_pfa`, doi: :doi:`10.1093/gigascience/giab042` Mantis is a fully customizable protein function annotation\, that dynamically integrates multiple reference databases to produce consensus\-driven annotations. .. conda:package:: mantis_pfa |downloads_mantis_pfa| |docker_mantis_pfa| :versions: .. raw:: html
1.5.5-21.5.5-11.5.5-01.5.4-01.5.3-01.5.1-01.5.0-11.5.0-01.4.9-1 ``1.5.5-2``,  ``1.5.5-1``,  ``1.5.5-0``,  ``1.5.4-0``,  ``1.5.3-0``,  ``1.5.1-0``,  ``1.5.0-1``,  ``1.5.0-0``,  ``1.4.9-1``,  ``1.4.9-0``,  ``1.4.8-1``,  ``1.4.8-0``,  ``1.4.7-1``,  ``1.4.7-0``,  ``1.4.5-0``,  ``1.4.4-0``,  ``1.4.3-0`` .. raw:: html
:depends cython: :depends diamond: ``>=2.0.13`` :depends hmmer: ``>=3.2.1`` :depends libgcc-ng: ``>=12`` :depends nltk: ``>=3.6`` :depends numpy: :depends psutil: :depends python: ``>=3.10,<3.11.0a0`` :depends python_abi: ``3.10.* *_cp310`` :depends requests: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install mantis_pfa and update with:: mamba update mantis_pfa To create a new environment, run:: mamba create --name myenvname mantis_pfa with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/mantis_pfa: (see `mantis_pfa/tags`_ for valid values for ````) .. |downloads_mantis_pfa| image:: https://img.shields.io/conda/dn/bioconda/mantis_pfa.svg?style=flat :target: https://anaconda.org/bioconda/mantis_pfa :alt: (downloads) .. |docker_mantis_pfa| image:: https://quay.io/repository/biocontainers/mantis_pfa/status :target: https://quay.io/repository/biocontainers/mantis_pfa .. _`mantis_pfa/tags`: https://quay.io/repository/biocontainers/mantis_pfa?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mantis_pfa/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/mantis_pfa/README.html