:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'marge' .. highlight: bash marge ===== .. conda:recipe:: marge :replaces_section_title: :noindex: Model\-based Analysis of Regulation of Gene Expression :homepage: http://cistrome.org/MARGE :license: MIT / MIT :recipe: /`marge `_/`meta.yaml `_ .. conda:package:: marge |downloads_marge| |docker_marge| :versions: ``1.0-2``,  ``1.0-1``,  ``1.0-0`` :depends hdf5: :depends numpy: :depends pytables: :depends python: ``>3`` :depends scikit-learn: :depends scipy: :depends snakemake: ``3.*`` :depends twobitreader: :depends ucsc-bedclip: :depends ucsc-bigwigaverageoverbed: :depends ucsc-bigwigsummary: :depends ucsc-bigwigtobedgraph: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install marge and update with:: mamba update marge To create a new environment, run:: mamba create --name myenvname marge with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/marge: (see `marge/tags`_ for valid values for ````) .. |downloads_marge| image:: https://img.shields.io/conda/dn/bioconda/marge.svg?style=flat :target: https://anaconda.org/bioconda/marge :alt: (downloads) .. |docker_marge| image:: https://quay.io/repository/biocontainers/marge/status :target: https://quay.io/repository/biocontainers/marge .. _`marge/tags`: https://quay.io/repository/biocontainers/marge?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/marge/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/marge/README.html