:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'megahit' .. highlight: bash megahit ======= .. conda:recipe:: megahit :replaces_section_title: :noindex: MEGAHIT\: An ultra\-fast single\-node solution for large and complex metagenomics assembly via succinct de Bruijn graph :homepage: https://github.com/voutcn/megahit :license: GPL / GPL-3.0 :recipe: /`megahit `_/`meta.yaml `_ :links: biotools: :biotools:`megahit`, doi: :doi:`10.1093/bioinformatics/btv033` .. conda:package:: megahit |downloads_megahit| |docker_megahit| :versions: .. raw:: html
1.2.9-41.2.9-31.2.9-21.2.9-11.2.9-01.2.8-01.2.7-01.2.6-01.1.3-0 ``1.2.9-4``,  ``1.2.9-3``,  ``1.2.9-2``,  ``1.2.9-1``,  ``1.2.9-0``,  ``1.2.8-0``,  ``1.2.7-0``,  ``1.2.6-0``,  ``1.1.3-0``,  ``1.1.2-1``,  ``1.1.2-0``,  ``1.1.1-0``,  ``1.0.6-1``,  ``1.0.3-1``,  ``1.0.3-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends python: :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install megahit and update with:: mamba update megahit To create a new environment, run:: mamba create --name myenvname megahit with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/megahit: (see `megahit/tags`_ for valid values for ````) .. |downloads_megahit| image:: https://img.shields.io/conda/dn/bioconda/megahit.svg?style=flat :target: https://anaconda.org/bioconda/megahit :alt: (downloads) .. |docker_megahit| image:: https://quay.io/repository/biocontainers/megahit/status :target: https://quay.io/repository/biocontainers/megahit .. _`megahit/tags`: https://quay.io/repository/biocontainers/megahit?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/megahit/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/megahit/README.html