:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'merlin' .. highlight: bash merlin ====== .. conda:recipe:: merlin :replaces_section_title: :noindex: MERLIN uses sparse trees to represent gene flow in pedigrees and is a fast pedigree analysis package :homepage: http://csg.sph.umich.edu/abecasis/merlin :license: OpenSource :recipe: /`merlin `_/`meta.yaml `_ :links: biotools: :biotools:`Merlin`, doi: :doi:`10.1038/ng786` .. conda:package:: merlin |downloads_merlin| |docker_merlin| :versions: ``1.1.2-7``,  ``1.1.2-6``,  ``1.1.2-5``,  ``1.1.2-4``,  ``1.1.2-3``,  ``1.1.2-2``,  ``1.1.2-1``,  ``1.1.2-0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install merlin and update with:: mamba update merlin To create a new environment, run:: mamba create --name myenvname merlin with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/merlin: (see `merlin/tags`_ for valid values for ````) .. |downloads_merlin| image:: https://img.shields.io/conda/dn/bioconda/merlin.svg?style=flat :target: https://anaconda.org/bioconda/merlin :alt: (downloads) .. |docker_merlin| image:: https://quay.io/repository/biocontainers/merlin/status :target: https://quay.io/repository/biocontainers/merlin .. _`merlin/tags`: https://quay.io/repository/biocontainers/merlin?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/merlin/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/merlin/README.html