:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'metacerberus' .. highlight: bash metacerberus ============ .. conda:recipe:: metacerberus :replaces_section_title: :noindex: Versatile Functional Ontology Assignments for Metagenomes via Hidden Markov Model \(HMM\) searching with environmental focus of shotgun meta\'omics data :homepage: https://github.com/raw-lab/metacerberus :license: BSD / BSD-3-Clause :recipe: /`metacerberus `_/`meta.yaml `_ .. conda:package:: metacerberus |downloads_metacerberus| |docker_metacerberus| :versions: .. raw:: html
1.2.1-11.2.1-01.2-01.1-11.1-01.0-11.0-00.2-10.2-0 ``1.2.1-1``,  ``1.2.1-0``,  ``1.2-0``,  ``1.1-1``,  ``1.1-0``,  ``1.0-1``,  ``1.0-0``,  ``0.2-1``,  ``0.2-0``,  ``0.1-0`` .. raw:: html
:depends bbmap: :depends configargparse: :depends dominate: :depends fastp: :depends fastqc: :depends flash2: :depends grpcio: ``1.43.*`` :depends hmmer: :depends metaomestats: :depends pandas: :depends phanotate: :depends plotly: :depends porechop: :depends prodigal: :depends prodigal-gv: :depends psutil: :depends python: ``>=3.8`` :depends python-kaleido: :depends ray-core: :depends ray-dashboard: :depends ray-default: :depends ray-tune: :depends scikit-learn: :depends trnascan-se: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install metacerberus and update with:: mamba update metacerberus To create a new environment, run:: mamba create --name myenvname metacerberus with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/metacerberus: (see `metacerberus/tags`_ for valid values for ````) .. |downloads_metacerberus| image:: https://img.shields.io/conda/dn/bioconda/metacerberus.svg?style=flat :target: https://anaconda.org/bioconda/metacerberus :alt: (downloads) .. |docker_metacerberus| image:: https://quay.io/repository/biocontainers/metacerberus/status :target: https://quay.io/repository/biocontainers/metacerberus .. _`metacerberus/tags`: https://quay.io/repository/biocontainers/metacerberus?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/metacerberus/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/metacerberus/README.html