:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'metapi' .. highlight: bash metapi ====== .. conda:recipe:: metapi :replaces_section_title: :noindex: A general metagenomics data mining system focus on robust microbiome research :homepage: https://github.com/ohmeta/metapi :license: GPL3 / GPL-3.0-only :recipe: /`metapi `_/`meta.yaml `_ :links: biotools: :biotools:`metapi` .. conda:package:: metapi |downloads_metapi| |docker_metapi| :versions: .. raw:: html
3.0.0-02.5.0-02.4.0-02.3.0-02.2.0-02.1.4-02.1.3-02.1.2-02.1.1-0 ``3.0.0-0``,  ``2.5.0-0``,  ``2.4.0-0``,  ``2.3.0-0``,  ``2.2.0-0``,  ``2.1.4-0``,  ``2.1.3-0``,  ``2.1.2-0``,  ``2.1.1-0``,  ``1.1.0-0``,  ``1.0.5-0``,  ``1.0.4-0``,  ``1.0.3-0``,  ``1.0.2-0``,  ``1.0.1-0`` .. raw:: html
:depends biopython: ``>=1.73`` :depends executor: :depends fd-find: :depends matplotlib-base: :depends natsort: :depends numpy: :depends openpyxl: :depends pandas: :depends pigz: :depends python: ``>=3.7`` :depends ruamel.yaml: :depends seaborn: :depends seqkit: :depends seqtk: :depends snakemake-minimal: ``>=7.0`` :depends sra-tools: ``>=2.11.0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install metapi and update with:: mamba update metapi To create a new environment, run:: mamba create --name myenvname metapi with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/metapi: (see `metapi/tags`_ for valid values for ````) .. |downloads_metapi| image:: https://img.shields.io/conda/dn/bioconda/metapi.svg?style=flat :target: https://anaconda.org/bioconda/metapi :alt: (downloads) .. |docker_metapi| image:: https://quay.io/repository/biocontainers/metapi/status :target: https://quay.io/repository/biocontainers/metapi .. _`metapi/tags`: https://quay.io/repository/biocontainers/metapi?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/metapi/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/metapi/README.html