:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'metaprokka' .. highlight: bash metaprokka ========== .. conda:recipe:: metaprokka :replaces_section_title: :noindex: A fork of Prokka using Prodigal\-GV for phage annotation and metagenome\/metavirome tweaks :homepage: https://github.com/telatin/metaprokka :license: GPL / GPL-3.0-only :recipe: /`metaprokka `_/`meta.yaml `_ :links: biotools: :biotools:`metaprokka` .. conda:package:: metaprokka |downloads_metaprokka| |docker_metaprokka| :versions: ``1.15.0-0``,  ``1.14.6_1-3``,  ``1.14.6_1-2``,  ``1.14.6_1-1``,  ``1.14.6_1-0`` :depends perl: ``>=5.32.1,<6.0a0 *_perl5`` :depends perl-fastx-reader: ``>=1.11.0`` :depends prodigal-gv: ``>=2.11.0`` :depends prokka: ``1.14.6.*`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install metaprokka and update with:: mamba update metaprokka To create a new environment, run:: mamba create --name myenvname metaprokka with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/metaprokka: (see `metaprokka/tags`_ for valid values for ````) .. |downloads_metaprokka| image:: https://img.shields.io/conda/dn/bioconda/metaprokka.svg?style=flat :target: https://anaconda.org/bioconda/metaprokka :alt: (downloads) .. |docker_metaprokka| image:: https://quay.io/repository/biocontainers/metaprokka/status :target: https://quay.io/repository/biocontainers/metaprokka .. _`metaprokka/tags`: https://quay.io/repository/biocontainers/metaprokka?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/metaprokka/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/metaprokka/README.html