:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'methpipe' .. highlight: bash methpipe ======== .. conda:recipe:: methpipe :replaces_section_title: :noindex: A pipeline for analyzing DNA methylation data from bisulfite sequencing. :homepage: https://github.com/smithlabcode/methpipe :license: GPL-3 / GPL-3 :recipe: /`methpipe `_/`meta.yaml `_ .. conda:package:: methpipe |downloads_methpipe| |docker_methpipe| :versions: ``5.0.1-0`` :depends gsl: ``>=2.7,<2.8.0a0`` :depends htslib: ``>=1.15.1,<1.16.0a0`` :depends libgcc-ng: ``>=10.3.0`` :depends libstdcxx-ng: ``>=10.3.0`` :depends libzlib: ``>=1.2.11,<1.3.0a0`` :depends zlib: ``>=1.2.11,<1.3.0a0`` :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install methpipe and update with:: conda update methpipe or use the docker container:: docker pull quay.io/biocontainers/methpipe: (see `methpipe/tags`_ for valid values for ````) .. |downloads_methpipe| image:: https://img.shields.io/conda/dn/bioconda/methpipe.svg?style=flat :target: https://anaconda.org/bioconda/methpipe :alt: (downloads) .. |docker_methpipe| image:: https://quay.io/repository/biocontainers/methpipe/status :target: https://quay.io/repository/biocontainers/methpipe .. _`methpipe/tags`: https://quay.io/repository/biocontainers/methpipe?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/methpipe/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/methpipe/README.html