:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'migmap' .. highlight: bash migmap ====== .. conda:recipe:: migmap :replaces_section_title: :noindex: A wrapper for IgBlast V\-\(D\)\-J mapping tool designed to facilitate analysis immune receptor libraries profiled using high\-throughput sequencing. :homepage: https://github.com/mikessh/migmap :license: Apache / Apache-2.0 :recipe: /`migmap `_/`meta.yaml `_ .. conda:package:: migmap |downloads_migmap| |docker_migmap| :versions: ``1.0.3-6``,  ``1.0.3-5``,  ``1.0.3-4``,  ``1.0.3-3``,  ``1.0.3-2``,  ``1.0.3-0``,  ``1.0.2-0``,  ``0.9.7-0`` :depends igblast: :depends openjdk: ``<9`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install migmap and update with:: mamba update migmap To create a new environment, run:: mamba create --name myenvname migmap with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/migmap: (see `migmap/tags`_ for valid values for ````) .. |downloads_migmap| image:: https://img.shields.io/conda/dn/bioconda/migmap.svg?style=flat :target: https://anaconda.org/bioconda/migmap :alt: (downloads) .. |docker_migmap| image:: https://quay.io/repository/biocontainers/migmap/status :target: https://quay.io/repository/biocontainers/migmap .. _`migmap/tags`: https://quay.io/repository/biocontainers/migmap?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/migmap/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/migmap/README.html