:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'mira' .. highlight: bash mira ==== .. conda:recipe:: mira :replaces_section_title: :noindex: MIRA is a whole genome shotgun and EST sequence assembler for Sanger\, 454\, Solexa \(Illumina\)\, IonTorrent data and PacBio \(the later at the moment only CCS and error\-corrected CLR reads\) :homepage: https://sourceforge.net/p/mira-assembler/wiki/Home/ :license: GNU General Public License v2 or later (GPLv2+) :recipe: /`mira `_/`meta.yaml `_ :links: biotools: :biotools:`mira` .. conda:package:: mira |downloads_mira| |docker_mira| :versions: ``4.9.6-1``,  ``4.9.6-0``,  ``4.9.5-1``,  ``4.9.5-0``,  ``4.0.2-3``,  ``4.0.2-2``,  ``4.0.2-1``,  ``3.4.1.1-1``,  ``3.4.1.1-0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install mira and update with:: mamba update mira To create a new environment, run:: mamba create --name myenvname mira with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/mira: (see `mira/tags`_ for valid values for ````) .. |downloads_mira| image:: https://img.shields.io/conda/dn/bioconda/mira.svg?style=flat :target: https://anaconda.org/bioconda/mira :alt: (downloads) .. |docker_mira| image:: https://quay.io/repository/biocontainers/mira/status :target: https://quay.io/repository/biocontainers/mira .. _`mira/tags`: https://quay.io/repository/biocontainers/mira?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mira/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/mira/README.html