:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'msisensor-pro' .. highlight: bash msisensor-pro ============= .. conda:recipe:: msisensor-pro :replaces_section_title: :noindex: Microsatellite Instability \(MSI\) detection using high\-throughput sequencing data. :homepage: https://github.com/xjtu-omics/msisensor-pro :license: Custom Licence :recipe: /`msisensor-pro `_/`meta.yaml `_ .. conda:package:: msisensor-pro |downloads_msisensor-pro| |docker_msisensor-pro| :versions: .. raw:: html
1.2.0-61.2.0-51.2.0-41.2.0-31.2.0-21.2.0-11.2.0-01.1.a-11.1.a-0 ``1.2.0-6``,  ``1.2.0-5``,  ``1.2.0-4``,  ``1.2.0-3``,  ``1.2.0-2``,  ``1.2.0-1``,  ``1.2.0-0``,  ``1.1.a-1``,  ``1.1.a-0``,  ``1.0.a-8``,  ``1.0.a-7``,  ``1.0.a-3``,  ``1.0.a-2``,  ``1.0.a-1``,  ``1.0.a-0``,  ``0.1.1-9``,  ``0.1.1-8``,  ``0.1.1-7``,  ``0.1.1-6``,  ``0.1.1-5``,  ``0.1.1-0``,  ``0.0.1-0``,  ``v1.2.0-0`` .. raw:: html
:depends _openmp_mutex: ``>=4.5`` :depends htslib: ``>=1.17,<1.20.0a0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install msisensor-pro and update with:: mamba update msisensor-pro To create a new environment, run:: mamba create --name myenvname msisensor-pro with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/msisensor-pro: (see `msisensor-pro/tags`_ for valid values for ````) .. |downloads_msisensor-pro| image:: https://img.shields.io/conda/dn/bioconda/msisensor-pro.svg?style=flat :target: https://anaconda.org/bioconda/msisensor-pro :alt: (downloads) .. |docker_msisensor-pro| image:: https://quay.io/repository/biocontainers/msisensor-pro/status :target: https://quay.io/repository/biocontainers/msisensor-pro .. _`msisensor-pro/tags`: https://quay.io/repository/biocontainers/msisensor-pro?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/msisensor-pro/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/msisensor-pro/README.html