:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'mtsv' .. highlight: bash mtsv ==== .. conda:recipe:: mtsv :replaces_section_title: :noindex: MTSv is a suite of metagenomic binning and analysis tools. :homepage: https://github.com/FofanovLab/MTSv :license: MIT / MIT :recipe: /`mtsv `_/`meta.yaml `_ .. conda:package:: mtsv |downloads_mtsv| |docker_mtsv| :versions: ``1.0.6-2``,  ``1.0.6-1``,  ``1.0.6-0``,  ``1.0.5-0``,  ``1.0.4-0``,  ``1.0.3-0``,  ``1.0.2-0`` :depends biopython: :depends bwa: :depends click: :depends concoct: :depends ete3: :depends gsl: :depends libgcc-ng: ``>=7.5.0`` :depends libstdcxx-ng: ``>=7.5.0`` :depends megahit: :depends mtsv-tools: :depends numpy: :depends pandas: ``>=0.20.3`` :depends python: ``>=3.6,<3.7.0a0`` :depends python_abi: ``3.6.* *_cp36m`` :depends pyyaml: :depends samtools: :depends scipy: :depends six: :depends snakemake: ``>=4.1.0`` :depends wgfast: :depends zlib: ``>=1.2.11,<1.3.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install mtsv and update with:: mamba update mtsv To create a new environment, run:: mamba create --name myenvname mtsv with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/mtsv: (see `mtsv/tags`_ for valid values for ````) .. |downloads_mtsv| image:: https://img.shields.io/conda/dn/bioconda/mtsv.svg?style=flat :target: https://anaconda.org/bioconda/mtsv :alt: (downloads) .. |docker_mtsv| image:: https://quay.io/repository/biocontainers/mtsv/status :target: https://quay.io/repository/biocontainers/mtsv .. _`mtsv/tags`: https://quay.io/repository/biocontainers/mtsv?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mtsv/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/mtsv/README.html