:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'multiqc_sav' .. highlight: bash multiqc_sav =========== .. conda:recipe:: multiqc_sav :replaces_section_title: :noindex: MultiQC plugin to visualize Illumina SAV plots :homepage: http://multiqc.info :license: GPL3 :recipe: /`multiqc_sav `_/`meta.yaml `_ .. conda:package:: multiqc_sav |downloads_multiqc_sav| |docker_multiqc_sav| :versions: ``0.0.3-0``,  ``0.0.2-0``,  ``0.0.1-0`` :depends illumina-interop: ``>=1.1.23`` :depends multiqc: ``>=1.2`` :depends numpy: :depends pandas: :depends python: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install multiqc_sav and update with:: mamba update multiqc_sav To create a new environment, run:: mamba create --name myenvname multiqc_sav with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/multiqc_sav: (see `multiqc_sav/tags`_ for valid values for ````) .. |downloads_multiqc_sav| image:: https://img.shields.io/conda/dn/bioconda/multiqc_sav.svg?style=flat :target: https://anaconda.org/bioconda/multiqc_sav :alt: (downloads) .. |docker_multiqc_sav| image:: https://quay.io/repository/biocontainers/multiqc_sav/status :target: https://quay.io/repository/biocontainers/multiqc_sav .. _`multiqc_sav/tags`: https://quay.io/repository/biocontainers/multiqc_sav?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/multiqc_sav/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/multiqc_sav/README.html