:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'nanofilt' .. highlight: bash nanofilt ======== .. conda:recipe:: nanofilt :replaces_section_title: :noindex: Filtering and trimming of Oxford Nanopore Sequencing data :homepage: https://github.com/wdecoster/nanofilt :license: MIT / MIT License :recipe: /`nanofilt `_/`meta.yaml `_ .. conda:package:: nanofilt |downloads_nanofilt| |docker_nanofilt| :versions: .. raw:: html
2.8.0-02.7.1-02.7.0-02.6.0-02.5.0-02.3.0-02.2.0-12.2.0-02.0.1-0 ``2.8.0-0``,  ``2.7.1-0``,  ``2.7.0-0``,  ``2.6.0-0``,  ``2.5.0-0``,  ``2.3.0-0``,  ``2.2.0-1``,  ``2.2.0-0``,  ``2.0.1-0``,  ``1.9.2-0``,  ``1.8.0-0``,  ``1.7.0-0``,  ``1.2.0-0``,  ``1.1.4-0``,  ``1.1.3-0`` .. raw:: html
:depends biopython: :depends nanoget: ``>=0.15.0`` :depends nanomath: ``>=0.13.3`` :depends python: ``>=3`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install nanofilt and update with:: mamba update nanofilt To create a new environment, run:: mamba create --name myenvname nanofilt with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/nanofilt: (see `nanofilt/tags`_ for valid values for ````) .. |downloads_nanofilt| image:: https://img.shields.io/conda/dn/bioconda/nanofilt.svg?style=flat :target: https://anaconda.org/bioconda/nanofilt :alt: (downloads) .. |docker_nanofilt| image:: https://quay.io/repository/biocontainers/nanofilt/status :target: https://quay.io/repository/biocontainers/nanofilt .. _`nanofilt/tags`: https://quay.io/repository/biocontainers/nanofilt?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/nanofilt/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/nanofilt/README.html