:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'nanoplot' .. highlight: bash nanoplot ======== .. conda:recipe:: nanoplot :replaces_section_title: :noindex: Plotting suite for long read sequencing data and alignments :homepage: https://github.com/wdecoster/NanoPlot :license: MIT / MIT :recipe: /`nanoplot `_/`meta.yaml `_ .. conda:package:: nanoplot |downloads_nanoplot| |docker_nanoplot| :versions: .. raw:: html
1.42.0-01.41.6-01.41.3-01.41.0-01.40.2-01.40.0-01.39.0-01.38.1-01.38.0-0 ``1.42.0-0``,  ``1.41.6-0``,  ``1.41.3-0``,  ``1.41.0-0``,  ``1.40.2-0``,  ``1.40.0-0``,  ``1.39.0-0``,  ``1.38.1-0``,  ``1.38.0-0``,  ``1.37.0-0``,  ``1.36.2-1``,  ``1.36.2-0``,  ``1.36.1-0``,  ``1.35.5-0``,  ``1.35.4-0``,  ``1.32.1-0``,  ``1.32.0-0``,  ``1.31.0-0``,  ``1.30.1-0``,  ``1.30.0-0``,  ``1.29.1-0``,  ``1.29.0-0``,  ``1.28.4-0``,  ``1.28.2-0``,  ``1.28.1-1``,  ``1.28.1-0``,  ``1.28.0-0``,  ``1.27.0-0``,  ``1.26.3-0``,  ``1.26.2-0``,  ``1.26.1-0``,  ``1.25.1-0``,  ``1.25.0-0``,  ``1.24.0-0``,  ``1.23.1-0``,  ``1.20.0-1``,  ``1.20.0-0``,  ``1.19.0-0``,  ``1.18.2-1``,  ``1.13.0-1``,  ``1.13.0-0``,  ``1.11.0-0``,  ``1.10.4-0``,  ``1.8.1-0``,  ``1.2.2-0``,  ``1.1.0-0``,  ``1.0.0-0``,  ``0.16.4-0``,  ``0.16.2-0`` .. raw:: html
:depends biopython: :depends libpng: :depends nanoget: ``>=1.18.1`` :depends nanomath: ``>=1.0.0`` :depends numpy: ``>=1.16.5`` :depends pandas: ``>=1.1.0`` :depends plotly: ``>=5.4.0`` :depends pyarrow: :depends pysam: ``>0.10.0.0`` :depends python: ``>=3`` :depends python-dateutil: :depends python-kaleido: :depends scipy: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install nanoplot and update with:: mamba update nanoplot To create a new environment, run:: mamba create --name myenvname nanoplot with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/nanoplot: (see `nanoplot/tags`_ for valid values for ````) .. |downloads_nanoplot| image:: https://img.shields.io/conda/dn/bioconda/nanoplot.svg?style=flat :target: https://anaconda.org/bioconda/nanoplot :alt: (downloads) .. |docker_nanoplot| image:: https://quay.io/repository/biocontainers/nanoplot/status :target: https://quay.io/repository/biocontainers/nanoplot .. _`nanoplot/tags`: https://quay.io/repository/biocontainers/nanoplot?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/nanoplot/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/nanoplot/README.html