:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'nanoq' .. highlight: bash nanoq ===== .. conda:recipe:: nanoq :replaces_section_title: :noindex: Ultra\-fast quality control and summary reports for nanopore reads :homepage: https://github.com/esteinig/nanoq :license: MIT :recipe: /`nanoq `_/`meta.yaml `_ .. conda:package:: nanoq |downloads_nanoq| |docker_nanoq| :versions: .. raw:: html
0.10.0-20.10.0-10.10.0-00.9.0-10.9.0-00.8.6-10.8.6-00.8.5-10.8.5-0 ``0.10.0-2``,  ``0.10.0-1``,  ``0.10.0-0``,  ``0.9.0-1``,  ``0.9.0-0``,  ``0.8.6-1``,  ``0.8.6-0``,  ``0.8.5-1``,  ``0.8.5-0``,  ``0.8.4-0``,  ``0.8.3-0``,  ``0.8.2-0``,  ``0.8.1-0``,  ``0.2.1-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install nanoq and update with:: mamba update nanoq To create a new environment, run:: mamba create --name myenvname nanoq with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/nanoq: (see `nanoq/tags`_ for valid values for ````) .. |downloads_nanoq| image:: https://img.shields.io/conda/dn/bioconda/nanoq.svg?style=flat :target: https://anaconda.org/bioconda/nanoq :alt: (downloads) .. |docker_nanoq| image:: https://quay.io/repository/biocontainers/nanoq/status :target: https://quay.io/repository/biocontainers/nanoq .. _`nanoq/tags`: https://quay.io/repository/biocontainers/nanoq?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/nanoq/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/nanoq/README.html