:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'ncbi-ngs-sdk' .. highlight: bash ncbi-ngs-sdk ============ .. conda:recipe:: ncbi-ngs-sdk :replaces_section_title: :noindex: NGS is a new\, domain\-specific API for accessing reads\, alignments and pileups produced from Next Generation Sequencing. :homepage: https://github.com/ncbi/ngs :license: Public Domain :recipe: /`ncbi-ngs-sdk `_/`meta.yaml `_ .. conda:package:: ncbi-ngs-sdk |downloads_ncbi-ngs-sdk| |docker_ncbi-ngs-sdk| :versions: .. raw:: html
3.0.1-23.0.1-13.0.1-02.11.2-12.11.2-02.11.1-02.11.0-02.10.9-12.10.9-0 ``3.0.1-2``,  ``3.0.1-1``,  ``3.0.1-0``,  ``2.11.2-1``,  ``2.11.2-0``,  ``2.11.1-0``,  ``2.11.0-0``,  ``2.10.9-1``,  ``2.10.9-0``,  ``2.10.4-1``,  ``2.10.4-0``,  ``2.10.2-0``,  ``2.10.1-0``,  ``2.10.0-0``,  ``2.9.3-0``,  ``2.9.1-0``,  ``2.9.0-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends libiconv: ``>=1.17,<2.0a0`` :depends libstdcxx-ng: ``>=12`` :depends libxml2: ``>=2.10.4,<2.11.0a0`` :depends perl: ``>=5.32.1,<5.33.0a0 *_perl5`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install ncbi-ngs-sdk and update with:: mamba update ncbi-ngs-sdk To create a new environment, run:: mamba create --name myenvname ncbi-ngs-sdk with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/ncbi-ngs-sdk: (see `ncbi-ngs-sdk/tags`_ for valid values for ````) .. |downloads_ncbi-ngs-sdk| image:: https://img.shields.io/conda/dn/bioconda/ncbi-ngs-sdk.svg?style=flat :target: https://anaconda.org/bioconda/ncbi-ngs-sdk :alt: (downloads) .. |docker_ncbi-ngs-sdk| image:: https://quay.io/repository/biocontainers/ncbi-ngs-sdk/status :target: https://quay.io/repository/biocontainers/ncbi-ngs-sdk .. _`ncbi-ngs-sdk/tags`: https://quay.io/repository/biocontainers/ncbi-ngs-sdk?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ncbi-ngs-sdk/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/ncbi-ngs-sdk/README.html