:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'ncbimeta' .. highlight: bash ncbimeta ======== .. conda:recipe:: ncbimeta :replaces_section_title: :noindex: Efficient and comprehensive metadata acquisition from the NCBI databases \(includes SRA\). :homepage: https://github.com/ktmeaton/NCBImeta :license: MIT :recipe: /`ncbimeta `_/`meta.yaml `_ .. conda:package:: ncbimeta |downloads_ncbimeta| |docker_ncbimeta| :versions: .. raw:: html
0.8.3-00.8.2-00.8.1-00.7.0-00.6.6-00.6.5-00.6.4-00.6.3-00.6.2-0 ``0.8.3-0``,  ``0.8.2-0``,  ``0.8.1-0``,  ``0.7.0-0``,  ``0.6.6-0``,  ``0.6.5-0``,  ``0.6.4-0``,  ``0.6.3-0``,  ``0.6.2-0``,  ``0.6.1-0`` .. raw:: html
:depends biopython: ``>=1.74`` :depends lxml: ``>=4.6.3`` :depends numpy: :depends python: ``>=3.6,<3.10`` :depends pyyaml: ``>=5.4`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install ncbimeta and update with:: mamba update ncbimeta To create a new environment, run:: mamba create --name myenvname ncbimeta with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/ncbimeta: (see `ncbimeta/tags`_ for valid values for ````) .. |downloads_ncbimeta| image:: https://img.shields.io/conda/dn/bioconda/ncbimeta.svg?style=flat :target: https://anaconda.org/bioconda/ncbimeta :alt: (downloads) .. |docker_ncbimeta| image:: https://quay.io/repository/biocontainers/ncbimeta/status :target: https://quay.io/repository/biocontainers/ncbimeta .. _`ncbimeta/tags`: https://quay.io/repository/biocontainers/ncbimeta?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ncbimeta/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/ncbimeta/README.html