:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'newick_utils' .. highlight: bash newick_utils ============ .. conda:recipe:: newick_utils :replaces_section_title: :noindex: The Newick Utilities are a suite of Unix shell tools for processing phylogenetic trees. We distribute the package under the BSD License. Functions include re\-rooting\, extracting subtrees\, trimming\, pruning\, condensing\, drawing \(ASCII graphics or SVG\). :homepage: http://cegg.unige.ch/newick_utils :license: BSD License :recipe: /`newick_utils `_/`meta.yaml `_ .. conda:package:: newick_utils |downloads_newick_utils| |docker_newick_utils| :versions: ``1.6-7``,  ``1.6-6``,  ``1.6-5``,  ``1.6-4``,  ``1.6-3``,  ``1.6-2``,  ``1.6-1``,  ``1.6-0`` :depends libgcc-ng: ``>=12`` :depends libxml2: ``2.9.*`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install newick_utils and update with:: mamba update newick_utils To create a new environment, run:: mamba create --name myenvname newick_utils with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/newick_utils: (see `newick_utils/tags`_ for valid values for ````) .. |downloads_newick_utils| image:: https://img.shields.io/conda/dn/bioconda/newick_utils.svg?style=flat :target: https://anaconda.org/bioconda/newick_utils :alt: (downloads) .. |docker_newick_utils| image:: https://quay.io/repository/biocontainers/newick_utils/status :target: https://quay.io/repository/biocontainers/newick_utils .. _`newick_utils/tags`: https://quay.io/repository/biocontainers/newick_utils?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/newick_utils/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/newick_utils/README.html