:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'ngs-bits' .. highlight: bash ngs-bits ======== .. conda:recipe:: ngs-bits :replaces_section_title: :noindex: Short\-read sequencing tools :homepage: https://github.com/imgag/ngs-bits :license: MIT license :recipe: /`ngs-bits `_/`meta.yaml `_ .. conda:package:: ngs-bits |downloads_ngs-bits| |docker_ngs-bits| :versions: .. raw:: html
2024_02-02023_11-02023_09-02023_06-02023_02-22023_02-12023_02-02022_12-02022_11-0 ``2024_02-0``,  ``2023_11-0``,  ``2023_09-0``,  ``2023_06-0``,  ``2023_02-2``,  ``2023_02-1``,  ``2023_02-0``,  ``2022_12-0``,  ``2022_11-0``,  ``2022_10-1``,  ``2022_10-0``,  ``2022_07-1``,  ``2022_07-0``,  ``2022_04-0``,  ``2021_12-2``,  ``2021_12-1``,  ``2021_12-0``,  ``2021_09-0``,  ``2021_06-0``,  ``2021_03-1``,  ``2021_03-0``,  ``2020_12-0``,  ``2020_09-0``,  ``2020_06-0``,  ``2020_03-0``,  ``2019_11-0``,  ``2019_09-0``,  ``2019_08-0``,  ``2019_07-0``,  ``2019_05-0``,  ``2019_04-0``,  ``2019_03-0``,  ``2018_11-2``,  ``2018_10-2``,  ``2018_06-2``,  ``2018_06-1``,  ``2018_04-0`` .. raw:: html
:depends bzip2: ``>=1.0.8,<2.0a0`` :depends htslib: ``>=1.17,<1.18.0a0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends matplotlib-base: :depends python: ``>=3.11,<3.12.0a0`` :depends qt: ``>=5.12.9,<5.13.0a0`` :depends xz: ``>=5.2.6,<6.0a0`` :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install ngs-bits and update with:: mamba update ngs-bits To create a new environment, run:: mamba create --name myenvname ngs-bits with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/ngs-bits: (see `ngs-bits/tags`_ for valid values for ````) .. |downloads_ngs-bits| image:: https://img.shields.io/conda/dn/bioconda/ngs-bits.svg?style=flat :target: https://anaconda.org/bioconda/ngs-bits :alt: (downloads) .. |docker_ngs-bits| image:: https://quay.io/repository/biocontainers/ngs-bits/status :target: https://quay.io/repository/biocontainers/ngs-bits .. _`ngs-bits/tags`: https://quay.io/repository/biocontainers/ngs-bits?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ngs-bits/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/ngs-bits/README.html