:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'osra' .. highlight: bash osra ==== .. conda:recipe:: osra/2.1.0 :replaces_section_title: :noindex: OSRA is a utility designed to convert graphical representations of chemical structures\, as they appear in journal articles\, patent documents\, textbooks\, trade magazines etc.\, into SMILES or SDF. :homepage: http://cactus.nci.nih.gov/osra/ :license: Simplified BSD Licence :recipe: /`osra `_/`2.1.0 `_/`meta.yaml `_ :links: usegalaxy-eu: :usegalaxy-eu:`ctb_osra` .. conda:package:: osra |downloads_osra| |docker_osra| :versions: ``2.1.0-0``,  ``2.0.1-2``,  ``2.0.1-1``,  ``2.0.1-0`` :depends gocr: :depends graphicsmagick: ``>=1.3.26`` :depends libgcc: :depends ocrad: :depends poppler: :depends potrace: :depends tclap: :depends tesseract: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install osra and update with:: mamba update osra To create a new environment, run:: mamba create --name myenvname osra with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/osra: (see `osra/tags`_ for valid values for ````) .. |downloads_osra| image:: https://img.shields.io/conda/dn/bioconda/osra.svg?style=flat :target: https://anaconda.org/bioconda/osra :alt: (downloads) .. |docker_osra| image:: https://quay.io/repository/biocontainers/osra/status :target: https://quay.io/repository/biocontainers/osra .. _`osra/tags`: https://quay.io/repository/biocontainers/osra?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/osra/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/osra/README.html