:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'pandaseq' .. highlight: bash pandaseq ======== .. conda:recipe:: pandaseq :replaces_section_title: :noindex: PANDASEQ is a program to align Illumina reads\, optionally with PCR primers embedded in the sequence\, and reconstruct an overlapping sequence. :homepage: https://github.com/neufeld/pandaseq :license: GPL3 :recipe: /`pandaseq `_/`meta.yaml `_ .. conda:package:: pandaseq |downloads_pandaseq| |docker_pandaseq| :versions: .. raw:: html
2.11-82.11-72.11-62.11-52.11-42.11-32.11-22.11-12.10-0 ``2.11-8``,  ``2.11-7``,  ``2.11-6``,  ``2.11-5``,  ``2.11-4``,  ``2.11-3``,  ``2.11-2``,  ``2.11-1``,  ``2.10-0``,  ``2.8.1-7``,  ``2.8.1-6``,  ``2.8.1-5``,  ``2.8.1-4``,  ``2.8.1-3``,  ``2.8.1-2``,  ``2.8.1-1`` .. raw:: html
:depends bzip2: ``>=1.0.8,<2.0a0`` :depends libgcc-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install pandaseq and update with:: mamba update pandaseq To create a new environment, run:: mamba create --name myenvname pandaseq with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/pandaseq: (see `pandaseq/tags`_ for valid values for ````) .. |downloads_pandaseq| image:: https://img.shields.io/conda/dn/bioconda/pandaseq.svg?style=flat :target: https://anaconda.org/bioconda/pandaseq :alt: (downloads) .. |docker_pandaseq| image:: https://quay.io/repository/biocontainers/pandaseq/status :target: https://quay.io/repository/biocontainers/pandaseq .. _`pandaseq/tags`: https://quay.io/repository/biocontainers/pandaseq?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pandaseq/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/pandaseq/README.html