:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'panoct' .. highlight: bash panoct ====== .. conda:recipe:: panoct :replaces_section_title: :noindex: PanOCT\, Pan\-genome Ortholog Clustering Tool\, is a program for pan\-genomic analysis of closely related prokaryotic species or strains :homepage: https://panoct.sourceforge.io/ :license: GPL-3.0 :recipe: /`panoct `_/`meta.yaml `_ .. conda:package:: panoct |downloads_panoct| |docker_panoct| :versions: ``3.23-1``,  ``3.23-0`` :depends perl: ``>=5.26.2,<5.27.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install panoct and update with:: mamba update panoct To create a new environment, run:: mamba create --name myenvname panoct with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/panoct: (see `panoct/tags`_ for valid values for ````) .. |downloads_panoct| image:: https://img.shields.io/conda/dn/bioconda/panoct.svg?style=flat :target: https://anaconda.org/bioconda/panoct :alt: (downloads) .. |docker_panoct| image:: https://quay.io/repository/biocontainers/panoct/status :target: https://quay.io/repository/biocontainers/panoct .. _`panoct/tags`: https://quay.io/repository/biocontainers/panoct?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/panoct/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/panoct/README.html