:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'pash' .. highlight: bash pash ==== .. conda:recipe:: pash :replaces_section_title: :noindex: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massively parallel DNA sequencing :homepage: http://www.bioinformatics.bbsrc.ac.uk/projects/bismark/ :license: Unknown :recipe: /`pash `_/`meta.yaml `_ :links: biotools: :biotools:`pash` .. conda:package:: pash |downloads_pash| |docker_pash| :versions: ``3.0.6.2-0`` :depends glib: :depends libgcc: :depends ruby: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install pash and update with:: mamba update pash To create a new environment, run:: mamba create --name myenvname pash with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/pash: (see `pash/tags`_ for valid values for ````) .. |downloads_pash| image:: https://img.shields.io/conda/dn/bioconda/pash.svg?style=flat :target: https://anaconda.org/bioconda/pash :alt: (downloads) .. |docker_pash| image:: https://quay.io/repository/biocontainers/pash/status :target: https://quay.io/repository/biocontainers/pash .. _`pash/tags`: https://quay.io/repository/biocontainers/pash?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pash/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/pash/README.html