:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'pepnovo' .. highlight: bash pepnovo ======= .. conda:recipe:: pepnovo :replaces_section_title: :noindex: PepNovo serves as a high throughput de novo peptide sequencing tool for tandem mass spectrometry data :homepage: http://proteomics.ucsd.edu/Software/PepNovo/ :license: BSD :recipe: /`pepnovo `_/`meta.yaml `_ :links: biotools: :biotools:`pepnovo` .. conda:package:: pepnovo |downloads_pepnovo| |docker_pepnovo| :versions: ``20101117-3``,  ``20101117-2``,  ``20101117-1``,  ``20101117-0`` :depends libgcc-ng: ``>=9.3.0`` :depends libstdcxx-ng: ``>=9.3.0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install pepnovo and update with:: mamba update pepnovo To create a new environment, run:: mamba create --name myenvname pepnovo with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/pepnovo: (see `pepnovo/tags`_ for valid values for ````) .. |downloads_pepnovo| image:: https://img.shields.io/conda/dn/bioconda/pepnovo.svg?style=flat :target: https://anaconda.org/bioconda/pepnovo :alt: (downloads) .. |docker_pepnovo| image:: https://quay.io/repository/biocontainers/pepnovo/status :target: https://quay.io/repository/biocontainers/pepnovo .. _`pepnovo/tags`: https://quay.io/repository/biocontainers/pepnovo?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pepnovo/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/pepnovo/README.html