:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'perl-bioperl' .. highlight: bash perl-bioperl ============ .. conda:recipe:: perl-bioperl :replaces_section_title: :noindex: Bioinformatics Toolkit :homepage: http://metacpan.org/pod/BioPerl :license: perl_5 :recipe: /`perl-bioperl `_/`meta.yaml `_ :links: biotools: :biotools:`bioperl`, doi: :doi:`10.1007/978-1-59745-535-0_26` .. conda:package:: perl-bioperl |downloads_perl-bioperl| |docker_perl-bioperl| :versions: .. raw:: html
1.7.8-11.7.8-01.7.2-111.7.2-101.7.2-91.7.2-81.6.924-71.6.924-61.6.924-5 ``1.7.8-1``,  ``1.7.8-0``,  ``1.7.2-11``,  ``1.7.2-10``,  ``1.7.2-9``,  ``1.7.2-8``,  ``1.6.924-7``,  ``1.6.924-6``,  ``1.6.924-5``,  ``1.6.924-4``,  ``1.6.924-3``,  ``1.6.924-2``,  ``1.6.924-1``,  ``1.6.924-0`` .. raw:: html
:depends perl: :depends perl-bio-asn1-entrezgene: :depends perl-bio-coordinate: :depends perl-bio-featureio: :depends perl-bio-samtools: :depends perl-bio-searchio-hmmer: :depends perl-bio-tools-phylo-paml: :depends perl-bio-tools-run-alignment-clustalw: :depends perl-bio-tools-run-alignment-tcoffee: :depends perl-bioperl-core: ``1.7.8.*`` :depends perl-bioperl-run: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install perl-bioperl and update with:: mamba update perl-bioperl To create a new environment, run:: mamba create --name myenvname perl-bioperl with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/perl-bioperl: (see `perl-bioperl/tags`_ for valid values for ````) .. |downloads_perl-bioperl| image:: https://img.shields.io/conda/dn/bioconda/perl-bioperl.svg?style=flat :target: https://anaconda.org/bioconda/perl-bioperl :alt: (downloads) .. |docker_perl-bioperl| image:: https://quay.io/repository/biocontainers/perl-bioperl/status :target: https://quay.io/repository/biocontainers/perl-bioperl .. _`perl-bioperl/tags`: https://quay.io/repository/biocontainers/perl-bioperl?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/perl-bioperl/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/perl-bioperl/README.html