:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'piranha' .. highlight: bash piranha ======= .. conda:recipe:: piranha :replaces_section_title: :noindex: Piranha is a peak\-caller for CLIP\- and RIP\-Seq data. :homepage: http://smithlabresearch.org/software/piranha/ :license: GNU General Public License v3 (GPLv3) :recipe: /`piranha `_/`meta.yaml `_ .. conda:package:: piranha |downloads_piranha| |docker_piranha| :versions: .. raw:: html
1.2.1-111.2.1-101.2.1-91.2.1-81.2.1-71.2.1-61.2.1-51.2.1-31.2.1-2 ``1.2.1-11``,  ``1.2.1-10``,  ``1.2.1-9``,  ``1.2.1-8``,  ``1.2.1-7``,  ``1.2.1-6``,  ``1.2.1-5``,  ``1.2.1-3``,  ``1.2.1-2``,  ``1.2.1-1``,  ``1.2.1-0`` .. raw:: html
:depends bamtools: ``>=2.5.1,<2.5.2.0a0`` :depends gsl: ``>=2.7,<2.8.0a0`` :depends libgcc-ng: ``>=10.3.0`` :depends libstdcxx-ng: ``>=10.3.0`` :depends python_abi: ``2.7.* *_cp27mu`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install piranha and update with:: mamba update piranha To create a new environment, run:: mamba create --name myenvname piranha with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/piranha: (see `piranha/tags`_ for valid values for ````) .. |downloads_piranha| image:: https://img.shields.io/conda/dn/bioconda/piranha.svg?style=flat :target: https://anaconda.org/bioconda/piranha :alt: (downloads) .. |docker_piranha| image:: https://quay.io/repository/biocontainers/piranha/status :target: https://quay.io/repository/biocontainers/piranha .. _`piranha/tags`: https://quay.io/repository/biocontainers/piranha?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/piranha/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/piranha/README.html