:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'plant_tribes_assembly_post_processor' .. highlight: bash plant_tribes_assembly_post_processor ==================================== .. conda:recipe:: plant_tribes_assembly_post_processor :replaces_section_title: :noindex: Transcriptome assembly post processing pipeline :homepage: https://github.com/dePamphilis/PlantTribes :license: GNU General Public License v3 (GPLv3) :recipe: /`plant_tribes_assembly_post_processor `_/`meta.yaml `_ .. conda:package:: plant_tribes_assembly_post_processor |downloads_plant_tribes_assembly_post_processor| |docker_plant_tribes_assembly_post_processor| :versions: .. raw:: html
1.0.4-11.0.4-01.0.3-11.0.3-01.0.2-11.0.2-01.0.1-11.0.1-01.0.0-1 ``1.0.4-1``,  ``1.0.4-0``,  ``1.0.3-1``,  ``1.0.3-0``,  ``1.0.2-1``,  ``1.0.2-0``,  ``1.0.1-1``,  ``1.0.1-0``,  ``1.0.0-1``,  ``1.0.0-0`` .. raw:: html
:depends cap3: :depends genometools-genometools: ``>=1,<2`` :depends hmmer: ``>=3`` :depends mafft: ``>=7,<8`` :depends perl: ``>=5.22`` :depends perl-estscan2: :depends transdecoder: ``>=5,<6`` :depends trimal: ``>=1.4,<2`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install plant_tribes_assembly_post_processor and update with:: mamba update plant_tribes_assembly_post_processor To create a new environment, run:: mamba create --name myenvname plant_tribes_assembly_post_processor with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/plant_tribes_assembly_post_processor: (see `plant_tribes_assembly_post_processor/tags`_ for valid values for ````) .. |downloads_plant_tribes_assembly_post_processor| image:: https://img.shields.io/conda/dn/bioconda/plant_tribes_assembly_post_processor.svg?style=flat :target: https://anaconda.org/bioconda/plant_tribes_assembly_post_processor :alt: (downloads) .. |docker_plant_tribes_assembly_post_processor| image:: https://quay.io/repository/biocontainers/plant_tribes_assembly_post_processor/status :target: https://quay.io/repository/biocontainers/plant_tribes_assembly_post_processor .. _`plant_tribes_assembly_post_processor/tags`: https://quay.io/repository/biocontainers/plant_tribes_assembly_post_processor?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/plant_tribes_assembly_post_processor/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/plant_tribes_assembly_post_processor/README.html