:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'plascope' .. highlight: bash plascope ======== .. conda:recipe:: plascope :replaces_section_title: :noindex: PlaScope is a targeted approach to assess the plasmidome of bacteria. :homepage: https://github.com/labgem/PlaScope :license: GPL / GPL (>=3) :recipe: /`plascope `_/`meta.yaml `_ .. conda:package:: plascope |downloads_plascope| |docker_plascope| :versions: ``1.3.1-4``,  ``1.3.1-3``,  ``1.3.1-2``,  ``1.3.1-1``,  ``1.3.1-0``,  ``1.3-1``,  ``1.3-0`` :depends centrifuge: ``1.0.3`` :depends spades: ``>=3.10.1`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install plascope and update with:: mamba update plascope To create a new environment, run:: mamba create --name myenvname plascope with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/plascope: (see `plascope/tags`_ for valid values for ````) .. |downloads_plascope| image:: https://img.shields.io/conda/dn/bioconda/plascope.svg?style=flat :target: https://anaconda.org/bioconda/plascope :alt: (downloads) .. |docker_plascope| image:: https://quay.io/repository/biocontainers/plascope/status :target: https://quay.io/repository/biocontainers/plascope .. _`plascope/tags`: https://quay.io/repository/biocontainers/plascope?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/plascope/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/plascope/README.html