:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'plink2' .. highlight: bash plink2 ====== .. conda:recipe:: plink2 :replaces_section_title: :noindex: Whole genome association analysis toolset :homepage: https://www.cog-genomics.org/plink2 :license: GPL-3 :recipe: /`plink2 `_/`meta.yaml `_ Whole genome association analysis toolset\, designed to perform a range of basic\, large\-scale analyses in a computationally efficient manner. .. conda:package:: plink2 |downloads_plink2| |docker_plink2| :versions: .. raw:: html
2.00a5.10-02.00a5-02.00a3.7-42.00a3.7-32.00a3.7-22.00a3.7-12.00a3.7-02.00a3.3-02.00a2.3-2 ``2.00a5.10-0``,  ``2.00a5-0``,  ``2.00a3.7-4``,  ``2.00a3.7-3``,  ``2.00a3.7-2``,  ``2.00a3.7-1``,  ``2.00a3.7-0``,  ``2.00a3.3-0``,  ``2.00a2.3-2``,  ``2.00a2.3-1``,  ``2.00a2.3-0``,  ``1.90b3.35-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install plink2 and update with:: mamba update plink2 To create a new environment, run:: mamba create --name myenvname plink2 with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/plink2: (see `plink2/tags`_ for valid values for ````) .. |downloads_plink2| image:: https://img.shields.io/conda/dn/bioconda/plink2.svg?style=flat :target: https://anaconda.org/bioconda/plink2 :alt: (downloads) .. |docker_plink2| image:: https://quay.io/repository/biocontainers/plink2/status :target: https://quay.io/repository/biocontainers/plink2 .. _`plink2/tags`: https://quay.io/repository/biocontainers/plink2?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/plink2/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/plink2/README.html