:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'poretools' .. highlight: bash poretools ========= .. conda:recipe:: poretools :replaces_section_title: :noindex: poretools\: a toolkit for working with nanopore sequencing data from Oxford Nanopore :homepage: http://poretools.readthedocs.org/en/latest/ :license: MIT :recipe: /`poretools `_/`meta.yaml `_ .. conda:package:: poretools |downloads_poretools| |docker_poretools| :versions: .. raw:: html
0.6.1a1-80.6.1a1-70.6.1a1-60.6.1a1-50.6.1a1-40.6.1a1-30.6.1a0-00.6.0-00.5.1-1 ``0.6.1a1-8``,  ``0.6.1a1-7``,  ``0.6.1a1-6``,  ``0.6.1a1-5``,  ``0.6.1a1-4``,  ``0.6.1a1-3``,  ``0.6.1a0-0``,  ``0.6.0-0``,  ``0.5.1-1``,  ``0.5.1-0``,  ``0.5.0-0`` .. raw:: html
:depends h5py: ``>=2.2.0`` :depends hdf5: :depends matplotlib: :depends pandas: :depends python: ``<3`` :depends seaborn: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install poretools and update with:: mamba update poretools To create a new environment, run:: mamba create --name myenvname poretools with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/poretools: (see `poretools/tags`_ for valid values for ````) .. |downloads_poretools| image:: https://img.shields.io/conda/dn/bioconda/poretools.svg?style=flat :target: https://anaconda.org/bioconda/poretools :alt: (downloads) .. |docker_poretools| image:: https://quay.io/repository/biocontainers/poretools/status :target: https://quay.io/repository/biocontainers/poretools .. _`poretools/tags`: https://quay.io/repository/biocontainers/poretools?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/poretools/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/poretools/README.html