:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'ppanggolin' .. highlight: bash ppanggolin ========== .. conda:recipe:: ppanggolin :replaces_section_title: :noindex: PPanGGOLiN\: Depicting microbial species diversity via a Partitioned PanGenome Graph :homepage: https://github.com/labgem/PPanGGOLiN :documentation: https://ppanggolin.readthedocs.io :license: CeCiLL 2.1 :recipe: /`ppanggolin `_/`meta.yaml `_ .. conda:package:: ppanggolin |downloads_ppanggolin| |docker_ppanggolin| :versions: .. raw:: html
2.0.5-02.0.4-02.0.3-02.0.2-02.0.1-01.2.105-11.2.105-01.2.74-11.2.74-0 ``2.0.5-0``,  ``2.0.4-0``,  ``2.0.3-0``,  ``2.0.2-0``,  ``2.0.1-0``,  ``1.2.105-1``,  ``1.2.105-0``,  ``1.2.74-1``,  ``1.2.74-0``,  ``1.2.63-1``,  ``1.2.63-0``,  ``1.2.61-0``,  ``1.2.46-1``,  ``1.2.46-0``,  ``1.1.136-1``,  ``1.1.136-0``,  ``1.1.131-0``,  ``1.1.96-0``,  ``1.1.85-1``,  ``1.1.85-0``,  ``1.1.72-0``,  ``1.0.13-0``,  ``1.0.1-0``,  ``1.0.0-0``,  ``v0.3.88-1``,  ``v0.3.88-0`` .. raw:: html
:depends aragorn: ``1.2.*`` :depends bokeh: ``3.*`` :depends colorlover: ``0.3.*`` :depends gmpy2: ``2.*`` :depends infernal: ``1.1.*`` :depends libgcc-ng: ``>=12`` :depends mafft: :depends mmseqs2: :depends networkx: ``3.*`` :depends numpy: ``1.*`` :depends pandas: ``2.*`` :depends plotly: ``5.*`` :depends pyrodigal: ``3.*`` :depends pytables: ``3.*`` :depends python: ``>=3.10,<3.11.0a0`` :depends python_abi: ``3.10.* *_cp310`` :depends scipy: ``1.*`` :depends tqdm: ``4.*`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install ppanggolin and update with:: mamba update ppanggolin To create a new environment, run:: mamba create --name myenvname ppanggolin with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/ppanggolin: (see `ppanggolin/tags`_ for valid values for ````) .. |downloads_ppanggolin| image:: https://img.shields.io/conda/dn/bioconda/ppanggolin.svg?style=flat :target: https://anaconda.org/bioconda/ppanggolin :alt: (downloads) .. |docker_ppanggolin| image:: https://quay.io/repository/biocontainers/ppanggolin/status :target: https://quay.io/repository/biocontainers/ppanggolin .. _`ppanggolin/tags`: https://quay.io/repository/biocontainers/ppanggolin?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ppanggolin/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/ppanggolin/README.html