:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'presto' .. highlight: bash presto ====== .. conda:recipe:: presto :replaces_section_title: :noindex: A bioinformatics toolkit for processing high\-throughput lymphocyte receptor sequencing data. :homepage: https://bitbucket.org/kleinstein/presto :documentation: https://presto.readthedocs.io :license: AGPL / AGPL-3.0-or-later :recipe: /`presto `_/`meta.yaml `_ .. conda:package:: presto |downloads_presto| |docker_presto| :versions: .. raw:: html
0.7.2-00.7.1-00.7.0-00.6.2-00.6.1-00.6.0-00.5.13-10.5.13-00.5.12-0 ``0.7.2-0``,  ``0.7.1-0``,  ``0.7.0-0``,  ``0.6.2-0``,  ``0.6.1-0``,  ``0.6.0-0``,  ``0.5.13-1``,  ``0.5.13-0``,  ``0.5.12-0``,  ``0.5.10-0``,  ``0.5.4-1``,  ``0.5.4-0`` .. raw:: html
:depends biopython: ``>=1.71`` :depends blast: ``>=2.5`` :depends muscle: ``>=3.8`` :depends numpy: ``>=1.8`` :depends packaging: :depends pandas: ``>=0.24`` :depends python: ``>=3`` :depends scipy: ``>=0.14`` :depends vsearch: ``>=2.3.2`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install presto and update with:: mamba update presto To create a new environment, run:: mamba create --name myenvname presto with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/presto: (see `presto/tags`_ for valid values for ````) .. |downloads_presto| image:: https://img.shields.io/conda/dn/bioconda/presto.svg?style=flat :target: https://anaconda.org/bioconda/presto :alt: (downloads) .. |docker_presto| image:: https://quay.io/repository/biocontainers/presto/status :target: https://quay.io/repository/biocontainers/presto .. _`presto/tags`: https://quay.io/repository/biocontainers/presto?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/presto/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/presto/README.html