:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'promod3'
.. highlight: bash

promod3
=======

.. conda:recipe:: promod3
   :replaces_section_title:
   :noindex:

   ProMod3 is a tool for protein structure prediction and refinement

   :homepage: https://openstructure.org/promod3/
   :developer docs: https://git.scicore.unibas.ch/schwede/ProMod3
   :license: Apache / Apache-2.0
   :recipe: /`promod3 <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/promod3>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/promod3/meta.yaml>`_
   :links: biotools: :biotools:`promod3`, doi: :doi:`10.1371/journal.pcbi.1008667`

   ProMod3 is a modelling engine based on the OpenStructure computational
   structural biology framework \(www.openstructure.org\)
   that can perform all steps required to generate a protein model by
   homology. Its modular design aims at implementing flexible modelling
   pipelines and fast prototyping of novel algorithms.



.. conda:package:: promod3

   |downloads_promod3| |docker_promod3|

   :versions:
      
      

      ``3.6.0-0``,  ``3.5.0-0``

      

   
   :depends libboost: ``>=1.86.0,<1.87.0a0``
   :depends libboost-python: ``>=1.86.0,<1.87.0a0``
   :depends libgcc: ``>=13``
   :depends libstdcxx: ``>=13``
   :depends openmm: ``>=8.3.1,<9.0a0``
   :depends openstructure: ``>=2.11.0,<2.12.0a0``
   :depends python: ``>=3.10,<3.11.0a0 *_cpython``
   :depends python_abi: ``3.10.* *_cp310``
   :requirements:

   :additional platforms:
      
      .. raw:: html

         <span class="additional-platforms"><code>linux-aarch64</code>,  <code>osx-arm64</code></span>
      

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install promod3

   and update with::

      mamba update promod3

  To create a new environment, run::

      mamba create --name myenvname promod3

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/promod3:<tag>

   (see `promod3/tags`_ for valid values for ``<tag>``)


.. |downloads_promod3| image:: https://img.shields.io/conda/dn/bioconda/promod3.svg?style=flat
   :target: https://anaconda.org/bioconda/promod3
   :alt:   (downloads)
.. |docker_promod3| image:: https://quay.io/repository/biocontainers/promod3/status
   :target: https://quay.io/repository/biocontainers/promod3
.. _`promod3/tags`: https://quay.io/repository/biocontainers/promod3?tab=tags


.. raw:: html

    <script>
        var package = "promod3";
        var versions = ["3.6.0","3.5.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

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