:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'proteowizard' .. highlight: bash proteowizard ============ .. conda:recipe:: proteowizard :replaces_section_title: :noindex: Tools for dealing with mass spectrometry files \(e.g.\, mzML\, mzXML\, mzIdentML\, MGF\) :homepage: https://proteowizard.sourceforge.net :license: Apache 2.0 :recipe: /`proteowizard `_/`meta.yaml `_ :links: biotools: :biotools:`proteowizard`, doi: :doi:`10.1038/nbt.2377` .. conda:package:: proteowizard |downloads_proteowizard| |docker_proteowizard| :versions: ``3_0_9992-2``,  ``3_0_9992-0`` :depends libstdcxx-ng: ``>=4.9`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install proteowizard and update with:: mamba update proteowizard To create a new environment, run:: mamba create --name myenvname proteowizard with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/proteowizard: (see `proteowizard/tags`_ for valid values for ````) .. |downloads_proteowizard| image:: https://img.shields.io/conda/dn/bioconda/proteowizard.svg?style=flat :target: https://anaconda.org/bioconda/proteowizard :alt: (downloads) .. |docker_proteowizard| image:: https://quay.io/repository/biocontainers/proteowizard/status :target: https://quay.io/repository/biocontainers/proteowizard .. _`proteowizard/tags`: https://quay.io/repository/biocontainers/proteowizard?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/proteowizard/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/proteowizard/README.html