:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'pyfaidx'
.. highlight: bash

pyfaidx
=======

.. conda:recipe:: pyfaidx
   :replaces_section_title:
   :noindex:

   pyfaidx\: efficient pythonic random access to fasta subsequences

   :homepage: https://github.com/mdshw5/pyfaidx/
   :license: BSD / BSD License
   :recipe: /`pyfaidx <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/pyfaidx>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/pyfaidx/meta.yaml>`_
   :links: biotools: :biotools:`pyfaidx`, doi: :doi:`10.7287/peerj.preprints.970v1`

   


.. conda:package:: pyfaidx

   |downloads_pyfaidx| |docker_pyfaidx|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>0.7.1-0</code>,  <code>0.7.0-1</code>,  <code>0.7.0-0</code>,  <code>0.6.4-0</code>,  <code>0.6.3.1-1</code>,  <code>0.6.3.1-0</code>,  <code>0.6.2-0</code>,  <code>0.6.1-0</code>,  <code>0.6.0-0</code>,  </span></summary>
      

      ``0.7.1-0``,  ``0.7.0-1``,  ``0.7.0-0``,  ``0.6.4-0``,  ``0.6.3.1-1``,  ``0.6.3.1-0``,  ``0.6.2-0``,  ``0.6.1-0``,  ``0.6.0-0``,  ``0.5.9.5-0``,  ``0.5.9.4-0``,  ``0.5.9.2-0``,  ``0.5.9.1-1``,  ``0.5.9.1-0``,  ``0.5.9-1``,  ``0.5.9-0``,  ``0.5.8-1``,  ``0.5.8-0``,  ``0.5.7-0``,  ``0.5.6-0``,  ``0.5.5.2-1``,  ``0.5.5.2-0``,  ``0.5.4.1-0``,  ``0.5.3-0``,  ``0.5.1-0``,  ``0.5.0-0``,  ``0.4.9.2-0``,  ``0.4.8.1-4``,  ``0.4.8.1-3``,  ``0.4.8.1-2``,  ``0.4.8.1-0``,  ``0.4.7.1-3``,  ``0.4.7.1-2``,  ``0.4.7.1-0``,  ``0.4.4-0``

      
      .. raw:: html

         </details>
      

   
   :depends biopython: 
   :depends packaging: 
   :depends pysam: 
   :depends python: 
   :depends pyvcf3: 
   :depends setuptools: 
   :depends six: 
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install pyfaidx

   and update with::

      conda update pyfaidx

   or use the docker container::

      docker pull quay.io/biocontainers/pyfaidx:<tag>

   (see `pyfaidx/tags`_ for valid values for ``<tag>``)


.. |downloads_pyfaidx| image:: https://img.shields.io/conda/dn/bioconda/pyfaidx.svg?style=flat
   :target: https://anaconda.org/bioconda/pyfaidx
   :alt:   (downloads)
.. |docker_pyfaidx| image:: https://quay.io/repository/biocontainers/pyfaidx/status
   :target: https://quay.io/repository/biocontainers/pyfaidx
.. _`pyfaidx/tags`: https://quay.io/repository/biocontainers/pyfaidx?tab=tags


.. raw:: html

    <script>
        var package = "pyfaidx";
        var versions = ["0.7.1","0.7.0","0.7.0","0.6.4","0.6.3.1"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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