:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'pyfastx' .. highlight: bash pyfastx ======= .. conda:recipe:: pyfastx :replaces_section_title: :noindex: pyfastx is a python module for fast random access to sequences from plain and gzipped FASTA\/Q file :homepage: https://github.com/lmdu/pyfastx :license: MIT / MIT :recipe: /`pyfastx `_/`meta.yaml `_ .. conda:package:: pyfastx |downloads_pyfastx| |docker_pyfastx| :versions: .. raw:: html
2.1.0-02.0.2-02.0.1-02.0.0-01.1.0-31.1.0-11.1.0-01.0.1-00.9.1-0 ``2.1.0-0``,  ``2.0.2-0``,  ``2.0.1-0``,  ``2.0.0-0``,  ``1.1.0-3``,  ``1.1.0-1``,  ``1.1.0-0``,  ``1.0.1-0``,  ``0.9.1-0``,  ``0.8.4-1``,  ``0.8.4-0``,  ``0.8.3-0``,  ``0.8.2-1``,  ``0.8.2-0``,  ``0.8.1-0``,  ``0.7.0-0``,  ``0.6.16-0``,  ``0.6.15-0``,  ``0.6.14-0``,  ``0.6.13-0``,  ``0.6.12-0``,  ``0.6.11-0``,  ``0.6.10-0``,  ``0.6.9-0``,  ``0.6.8-0``,  ``0.6.7-0``,  ``0.6.6-0``,  ``0.6.5-0``,  ``0.6.4-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends python: ``>=3.10,<3.11.0a0`` :depends python_abi: ``3.10.* *_cp310`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install pyfastx and update with:: mamba update pyfastx To create a new environment, run:: mamba create --name myenvname pyfastx with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/pyfastx: (see `pyfastx/tags`_ for valid values for ````) .. |downloads_pyfastx| image:: https://img.shields.io/conda/dn/bioconda/pyfastx.svg?style=flat :target: https://anaconda.org/bioconda/pyfastx :alt: (downloads) .. |docker_pyfastx| image:: https://quay.io/repository/biocontainers/pyfastx/status :target: https://quay.io/repository/biocontainers/pyfastx .. _`pyfastx/tags`: https://quay.io/repository/biocontainers/pyfastx?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pyfastx/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/pyfastx/README.html