:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'pypairs' .. highlight: bash pypairs ======= .. conda:recipe:: pypairs :replaces_section_title: :noindex: A python scRNA\-Seq classifier :homepage: https://github.com/rfechtner/pypairs :documentation: https://pypairs.readthedocs.io/ :license: BSD / BSD :recipe: /`pypairs `_/`meta.yaml `_ .. conda:package:: pypairs |downloads_pypairs| |docker_pypairs| :versions: ``3.2.3-0``,  ``3.2.2-0``,  ``3.2-0``,  ``3.1.1-0``,  ``3.1.0-0``,  ``3.0.9-0``,  ``2.0.6-0``,  ``2.0.5-0`` :depends anndata: ``>=0.6.13`` :depends colorama: :depends h5py: ``>=2.8.0`` :depends numba: ``>=0.40.1`` :depends numpy: ``>=1.15.4`` :depends pandas: ``>=0.23.4`` :depends psutil: :depends python: ``>=3`` :depends scikit-learn: :depends tqdm: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install pypairs and update with:: mamba update pypairs To create a new environment, run:: mamba create --name myenvname pypairs with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/pypairs: (see `pypairs/tags`_ for valid values for ````) .. |downloads_pypairs| image:: https://img.shields.io/conda/dn/bioconda/pypairs.svg?style=flat :target: https://anaconda.org/bioconda/pypairs :alt: (downloads) .. |docker_pypairs| image:: https://quay.io/repository/biocontainers/pypairs/status :target: https://quay.io/repository/biocontainers/pypairs .. _`pypairs/tags`: https://quay.io/repository/biocontainers/pypairs?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pypairs/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/pypairs/README.html