:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'quickmerge' .. highlight: bash quickmerge ========== .. conda:recipe:: quickmerge :replaces_section_title: :noindex: Quickmerge uses a simple concept to improve contiguity of genome assemblies based on long molecule sequences. :homepage: https://github.com/mahulchak/quickmerge :license: GPL-3 :recipe: /`quickmerge `_/`meta.yaml `_ .. conda:package:: quickmerge |downloads_quickmerge| |docker_quickmerge| :versions: ``0.3-5``,  ``0.3-4``,  ``0.3-3``,  ``0.3-2``,  ``0.3-1``,  ``0.3-0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends mummer: ``3.23.*`` :depends perl: ``>=5.32.1,<5.33.0a0 *_perl5`` :depends python: :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install quickmerge and update with:: mamba update quickmerge To create a new environment, run:: mamba create --name myenvname quickmerge with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/quickmerge: (see `quickmerge/tags`_ for valid values for ````) .. |downloads_quickmerge| image:: https://img.shields.io/conda/dn/bioconda/quickmerge.svg?style=flat :target: https://anaconda.org/bioconda/quickmerge :alt: (downloads) .. |docker_quickmerge| image:: https://quay.io/repository/biocontainers/quickmerge/status :target: https://quay.io/repository/biocontainers/quickmerge .. _`quickmerge/tags`: https://quay.io/repository/biocontainers/quickmerge?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/quickmerge/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/quickmerge/README.html