:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'r-acidsinglecell' .. highlight: bash r-acidsinglecell ================ .. conda:recipe:: r-acidsinglecell :replaces_section_title: :noindex: Toolkit for single\-cell RNA\-seq analysis that extends the functionality of SingleCellExperiment. :homepage: https://r.acidgenomics.com/packages/acidsinglecell/ :developer docs: https://github.com/acidgenomics/r-acidsinglecell :license: GPL / AGPL-3.0 :recipe: /`r-acidsinglecell `_/`meta.yaml `_ .. conda:package:: r-acidsinglecell |downloads_r-acidsinglecell| |docker_r-acidsinglecell| :versions: .. raw:: html
0.4.2-00.4.1-00.4.0-00.3.6-00.3.5-20.3.5-10.3.5-00.3.4-10.3.4-0 ``0.4.2-0``,  ``0.4.1-0``,  ``0.4.0-0``,  ``0.3.6-0``,  ``0.3.5-2``,  ``0.3.5-1``,  ``0.3.5-0``,  ``0.3.4-1``,  ``0.3.4-0``,  ``0.3.3-1``,  ``0.3.3-0``,  ``0.2.0-0``,  ``0.1.9-0``,  ``0.1.8-0``,  ``0.1.7-2``,  ``0.1.7-1``,  ``0.1.7-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.60.0`` :depends bioconductor-biocgenerics: ``>=0.46.0`` :depends bioconductor-deseq2: ``>=1.40.0`` :depends bioconductor-dropletutils: ``>=1.20.0`` :depends bioconductor-edger: ``>=3.42.0`` :depends bioconductor-iranges: ``>=2.34.0`` :depends bioconductor-s4vectors: ``>=0.38.0`` :depends bioconductor-scuttle: ``>=1.10.0`` :depends bioconductor-singlecellexperiment: ``>=1.22.0`` :depends bioconductor-summarizedexperiment: ``>=1.30.0`` :depends r-acidbase: ``>=0.7.0`` :depends r-acidcli: ``>=0.3.0`` :depends r-acidexperiment: ``>=0.5.0`` :depends r-acidgenerics: ``>=0.7.1`` :depends r-acidgenomes: ``>=0.6.0`` :depends r-acidplyr: ``>=0.5.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-goalie: ``>=0.7.1`` :depends r-matrix: ``>=1.6.1`` :depends r-pipette: ``>=0.14.0`` :depends r-syntactic: ``>=0.7.0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install r-acidsinglecell and update with:: mamba update r-acidsinglecell To create a new environment, run:: mamba create --name myenvname r-acidsinglecell with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/r-acidsinglecell: (see `r-acidsinglecell/tags`_ for valid values for ````) .. |downloads_r-acidsinglecell| image:: https://img.shields.io/conda/dn/bioconda/r-acidsinglecell.svg?style=flat :target: https://anaconda.org/bioconda/r-acidsinglecell :alt: (downloads) .. |docker_r-acidsinglecell| image:: https://quay.io/repository/biocontainers/r-acidsinglecell/status :target: https://quay.io/repository/biocontainers/r-acidsinglecell .. _`r-acidsinglecell/tags`: https://quay.io/repository/biocontainers/r-acidsinglecell?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/r-acidsinglecell/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/r-acidsinglecell/README.html