:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'r-bseqsc' .. highlight: bash r-bseqsc ======== .. conda:recipe:: r-bseqsc :replaces_section_title: :noindex: Companion package to\: A single\-cell transcriptomic map of the human and mouse pancreas reveals inter\- and intra\-cell population structure. Baron et al. Cell Systems \(2016\) https\:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27667365 :homepage: https://github.com/shenorrLab/bseqsc :license: GPL / GPL-2 :recipe: /`r-bseqsc `_/`meta.yaml `_ :links: doi: :doi:`10.1016/j.cels.2016.08.011` .. conda:package:: r-bseqsc |downloads_r-bseqsc| |docker_r-bseqsc| :versions: ``1.0-3``,  ``1.0-2``,  ``1.0-1``,  ``1.0-0`` :depends bioconductor-annotationdbi: ``>=1.48.0`` :depends bioconductor-biobase: ``>=2.46.0`` :depends bioconductor-edger: ``>=3.28.0`` :depends bioconductor-preprocesscore: ``>=1.48.0`` :depends r-abind: ``>=1.4_5`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-cssam: ``>=1.4`` :depends r-dplyr: ``>=1.0.6`` :depends r-e1071: ``>=1.7_7`` :depends r-ggplot2: ``>=3.3.3`` :depends r-nmf: ``>=0.21.0`` :depends r-openxlsx: ``>=4.2.3`` :depends r-pkgmaker: ``>=0.32.2`` :depends r-plyr: ``>=1.8.6`` :depends r-rngtools: ``>=1.5`` :depends r-scales: ``>=1.1.1`` :depends r-stringr: ``>=1.4.0`` :depends xbioc: ``>=0.1.18`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install r-bseqsc and update with:: mamba update r-bseqsc To create a new environment, run:: mamba create --name myenvname r-bseqsc with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/r-bseqsc: (see `r-bseqsc/tags`_ for valid values for ````) .. |downloads_r-bseqsc| image:: https://img.shields.io/conda/dn/bioconda/r-bseqsc.svg?style=flat :target: https://anaconda.org/bioconda/r-bseqsc :alt: (downloads) .. |docker_r-bseqsc| image:: https://quay.io/repository/biocontainers/r-bseqsc/status :target: https://quay.io/repository/biocontainers/r-bseqsc .. _`r-bseqsc/tags`: https://quay.io/repository/biocontainers/r-bseqsc?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/r-bseqsc/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/r-bseqsc/README.html