:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'r-metacoder' .. highlight: bash r-metacoder =========== .. conda:recipe:: r-metacoder :replaces_section_title: :noindex: A set of tools for parsing\, manipulating\, and graphing data classified by a hierarchy \(e.g. a taxonomy\). :homepage: https://github.com/grunwaldlab/metacoder :documentation: https://grunwaldlab.github.io/metacoder_documentation/ :license: GPL3 / GPL-2 | GPL-3 :recipe: /`r-metacoder `_/`meta.yaml `_ .. conda:package:: r-metacoder |downloads_r-metacoder| |docker_r-metacoder| :versions: .. raw:: html
0.3.7-00.3.6-30.3.6-20.3.6-10.3.6-00.3.5-20.3.5-10.3.5-00.3.4-3 ``0.3.7-0``,  ``0.3.6-3``,  ``0.3.6-2``,  ``0.3.6-1``,  ``0.3.6-0``,  ``0.3.5-2``,  ``0.3.5-1``,  ``0.3.5-0``,  ``0.3.4-3``,  ``0.3.4-2``,  ``0.3.4-1``,  ``0.3.4-0``,  ``0.3.3-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends r-ape: :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-cowplot: :depends r-crayon: :depends r-dplyr: :depends r-ga: :depends r-ggfittext: :depends r-ggplot2: :depends r-igraph: :depends r-lazyeval: :depends r-magrittr: :depends r-r6: :depends r-rcpp: :depends r-rcurl: :depends r-readr: :depends r-rlang: :depends r-seqinr: :depends r-stringi: ``>=1.7.12`` :depends r-stringr: :depends r-taxize: :depends r-tibble: :depends r-vegan: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install r-metacoder and update with:: mamba update r-metacoder To create a new environment, run:: mamba create --name myenvname r-metacoder with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/r-metacoder: (see `r-metacoder/tags`_ for valid values for ````) .. |downloads_r-metacoder| image:: https://img.shields.io/conda/dn/bioconda/r-metacoder.svg?style=flat :target: https://anaconda.org/bioconda/r-metacoder :alt: (downloads) .. |docker_r-metacoder| image:: https://quay.io/repository/biocontainers/r-metacoder/status :target: https://quay.io/repository/biocontainers/r-metacoder .. _`r-metacoder/tags`: https://quay.io/repository/biocontainers/r-metacoder?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/r-metacoder/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/r-metacoder/README.html