:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'r-qorts'
.. highlight: bash

r-qorts
=======

.. conda:recipe:: r-qorts
   :replaces_section_title:
   :noindex:

   QoRTs toolkit for analysis\, quality control\, and data management of RNA\-Seq
   datasets.


   :homepage: https://github.com/hartleys/QoRTs
   :license: Public Domain
   :recipe: /`r-qorts <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-qorts>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-qorts/meta.yaml>`_

   


.. conda:package:: r-qorts

   |downloads_r-qorts| |docker_r-qorts|

   :versions:
      
      

      ``1.3.6-5``,  ``1.3.6-0``,  ``1.3.0-2``,  ``1.3.0-1``,  ``1.3.0-0``

      

   
   :depends r-base: ``>=4.3,<4.4.0a0``
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install r-qorts

   and update with::

      mamba update r-qorts

  To create a new environment, run::

      mamba create --name myenvname r-qorts

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/r-qorts:<tag>

   (see `r-qorts/tags`_ for valid values for ``<tag>``)


.. |downloads_r-qorts| image:: https://img.shields.io/conda/dn/bioconda/r-qorts.svg?style=flat
   :target: https://anaconda.org/bioconda/r-qorts
   :alt:   (downloads)
.. |docker_r-qorts| image:: https://quay.io/repository/biocontainers/r-qorts/status
   :target: https://quay.io/repository/biocontainers/r-qorts
.. _`r-qorts/tags`: https://quay.io/repository/biocontainers/r-qorts?tab=tags


.. raw:: html

    <script>
        var package = "r-qorts";
        var versions = ["1.3.6","1.3.6","1.3.0","1.3.0","1.3.0"];
    </script>





Notes
-----
This package is a requirement of the main QoRTs package\; \"qorts\".



Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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