:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'r-scpred'
.. highlight: bash

r-scpred
========

.. conda:recipe:: r-scpred
   :replaces_section_title:
   :noindex:

   Bioconda\-installable version of scPred cell type classification method.

   :homepage: https://github.com/powellgenomicslab/scPred
   :developer docs: https://github.com/powellgenomicslab/scPred/tree/development
   :license: MIT
   :recipe: /`r-scpred <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-scpred>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-scpred/meta.yaml>`_

   


.. conda:package:: r-scpred

   |downloads_r-scpred| |docker_r-scpred|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.9.2-2</code>,  <code>1.9.2-1</code>,  <code>1.9.2-0</code>,  <code>1.9.0-0</code>,  <code>1.0-2</code>,  <code>1.0-1</code>,  <code>1.0-0</code>,  <code>v1.9.0-2</code>,  <code>v1.9.0-1</code>,  </span></summary>
      

      ``1.9.2-2``,  ``1.9.2-1``,  ``1.9.2-0``,  ``1.9.0-0``,  ``1.0-2``,  ``1.0-1``,  ``1.0-0``,  ``v1.9.0-2``,  ``v1.9.0-1``,  ``v1.9.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends r-caret: 
   :depends r-cli: 
   :depends r-crayon: 
   :depends r-ggbeeswarm: 
   :depends r-ggplot2: 
   :depends r-harmony: 
   :depends r-kernlab: 
   :depends r-knitr: 
   :depends r-mlmetrics: 
   :depends r-pbapply: 
   :depends r-proc: 
   :depends r-seuratobject: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install r-scpred

   and update with::

      mamba update r-scpred

  To create a new environment, run::

      mamba create --name myenvname r-scpred

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/r-scpred:<tag>

   (see `r-scpred/tags`_ for valid values for ``<tag>``)


.. |downloads_r-scpred| image:: https://img.shields.io/conda/dn/bioconda/r-scpred.svg?style=flat
   :target: https://anaconda.org/bioconda/r-scpred
   :alt:   (downloads)
.. |docker_r-scpred| image:: https://quay.io/repository/biocontainers/r-scpred/status
   :target: https://quay.io/repository/biocontainers/r-scpred
.. _`r-scpred/tags`: https://quay.io/repository/biocontainers/r-scpred?tab=tags


.. raw:: html

    <script>
        var package = "r-scpred";
        var versions = ["1.9.2","1.9.2","1.9.2","1.9.0","1.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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