:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'r-shinyngs' .. highlight: bash r-shinyngs ========== .. conda:recipe:: r-shinyngs :replaces_section_title: :noindex: Provides Shiny applications for various array and NGS applications. Currently very RNA\-seq centric\, with plans for expansion. :homepage: https://github.com/pinin4fjords/shinyngs :license: AGPL / AGPL-3.0 :recipe: /`r-shinyngs `_/`meta.yaml `_ .. conda:package:: r-shinyngs |downloads_r-shinyngs| |docker_r-shinyngs| :versions: .. raw:: html
1.8.5-01.8.4-01.8.3-01.8.2-01.8.1-01.8.0-01.7.2-21.7.2-11.7.2-0 ``1.8.5-0``,  ``1.8.4-0``,  ``1.8.3-0``,  ``1.8.2-0``,  ``1.8.1-0``,  ``1.8.0-0``,  ``1.7.2-2``,  ``1.7.2-1``,  ``1.7.2-0``,  ``1.7.1-1``,  ``1.7.1-0``,  ``1.6.1-0``,  ``1.6.0-1``,  ``1.6.0-0``,  ``1.5.9-0``,  ``1.5.8-0``,  ``1.5.6-1``,  ``1.5.6-0``,  ``1.5.5-0``,  ``1.5.4-0``,  ``1.5.3-0``,  ``1.5.1-0``,  ``1.5.0-0``,  ``1.4.2-3``,  ``1.4.2-2``,  ``1.4.2-1``,  ``1.4.2-0``,  ``1.4.1-0``,  ``1.4.0-0``,  ``1.3.2-0``,  ``1.3.0-1``,  ``1.3.0-0``,  ``1.2.0-0``,  ``1.1.0-0``,  ``1.0.1-0``,  ``1.0.0-0`` .. raw:: html
:depends bioconductor-gseabase: :depends bioconductor-limma: :depends bioconductor-summarizedexperiment: :depends pandoc: ``<2.19`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-base64enc: :depends r-biocmanager: :depends r-cluster: :depends r-cpp11: :depends r-data.table: :depends r-dendextend: ``>=0.18.0`` :depends r-dplyr: :depends r-dt: ``>=0.2`` :depends r-ggdendro: :depends r-ggplot2: :depends r-htmlwidgets: :depends r-markdown: :depends r-optparse: :depends r-pheatmap: :depends r-plotly: ``>=4.3.4`` :depends r-plyr: :depends r-png: :depends r-rcolorbrewer: :depends r-reshape2: :depends r-rmarkdown: :depends r-rsconnect: :depends r-scales: ``>=0.2.5`` :depends r-scatterplot3d: :depends r-shiny: :depends r-shinybs: :depends r-shinyjs: :depends r-shinythemes: :depends r-stringi: ``>=1.7.12`` :depends r-yaml: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install r-shinyngs and update with:: mamba update r-shinyngs To create a new environment, run:: mamba create --name myenvname r-shinyngs with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/r-shinyngs: (see `r-shinyngs/tags`_ for valid values for ````) .. |downloads_r-shinyngs| image:: https://img.shields.io/conda/dn/bioconda/r-shinyngs.svg?style=flat :target: https://anaconda.org/bioconda/r-shinyngs :alt: (downloads) .. |docker_r-shinyngs| image:: https://quay.io/repository/biocontainers/r-shinyngs/status :target: https://quay.io/repository/biocontainers/r-shinyngs .. _`r-shinyngs/tags`: https://quay.io/repository/biocontainers/r-shinyngs?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/r-shinyngs/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/r-shinyngs/README.html