:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'r-sleuth' .. highlight: bash r-sleuth ======== .. conda:recipe:: r-sleuth :replaces_section_title: :noindex: Tools for investigating RNA\-Seq. :homepage: http://pachterlab.github.io/sleuth/ :developer docs: https://github.com/pachterlab/sleuth :license: GPL / GPLv3 :recipe: /`r-sleuth `_/`meta.yaml `_ .. conda:package:: r-sleuth |downloads_r-sleuth| |docker_r-sleuth| :versions: .. raw:: html
0.30.1-10.30.1-00.30.0-60.30.0-50.30.0-40.30.0-30.30.0-20.30.0-10.30.0-0 ``0.30.1-1``,  ``0.30.1-0``,  ``0.30.0-6``,  ``0.30.0-5``,  ``0.30.0-4``,  ``0.30.0-3``,  ``0.30.0-2``,  ``0.30.0-1``,  ``0.30.0-0``,  ``0.29.0-0``,  ``0.28.0-0``,  ``0.0.1-0`` .. raw:: html
:depends bioconductor-rhdf5: :depends r-aggregation: :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-data.table: :depends r-dplyr: :depends r-ggplot2: :depends r-lazyeval: :depends r-mass: :depends r-matrixstats: :depends r-pheatmap: :depends r-reshape2: :depends r-shiny: :depends r-tidyr: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install r-sleuth and update with:: mamba update r-sleuth To create a new environment, run:: mamba create --name myenvname r-sleuth with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/r-sleuth: (see `r-sleuth/tags`_ for valid values for ````) .. |downloads_r-sleuth| image:: https://img.shields.io/conda/dn/bioconda/r-sleuth.svg?style=flat :target: https://anaconda.org/bioconda/r-sleuth :alt: (downloads) .. |docker_r-sleuth| image:: https://quay.io/repository/biocontainers/r-sleuth/status :target: https://quay.io/repository/biocontainers/r-sleuth .. _`r-sleuth/tags`: https://quay.io/repository/biocontainers/r-sleuth?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/r-sleuth/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/r-sleuth/README.html