:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'r-tidytacos'
.. highlight: bash

r-tidytacos
===========

.. conda:recipe:: r-tidytacos
   :replaces_section_title:
   :noindex:

   Functions to manipulate and visualize microbial community data

   :homepage: https://lebeerlab.github.io/tidytacos/
   :license: GPL-3.0-only
   :recipe: /`r-tidytacos <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-tidytacos>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-tidytacos/meta.yaml>`_

   Tidytacos \(tidy TAxonomic COmpositionS\) is an R package for the exploration of microbial community data. Such community data consists of read counts generated by amplicon sequencing \(e.g. a region of the 16S rRNA gene\) or metagenome \(shotgun\) sequencing. Each read count represents a number of sequencing reads identified for some taxon \(an ASV\, OTU\, species\, or higher\-level taxon\) in a sample.


.. conda:package:: r-tidytacos

   |downloads_r-tidytacos| |docker_r-tidytacos|

   :versions:
      
      

      ``1.0.8-0``

      

   
   :depends r-base: ``>=4.5,<4.6.0a0``
   :depends r-dplyr: 
   :depends r-forcats: 
   :depends r-ggplot2: 
   :depends r-magrittr: 
   :depends r-plotly: 
   :depends r-purrr: 
   :depends r-readr: 
   :depends r-rlang: 
   :depends r-stringr: 
   :depends r-tibble: 
   :depends r-tidyr: 
   :depends r-vegan: 
   :requirements:

   :additional platforms:
      

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install r-tidytacos

   and update with::

      mamba update r-tidytacos

  To create a new environment, run::

      mamba create --name myenvname r-tidytacos

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/r-tidytacos:<tag>

   (see `r-tidytacos/tags`_ for valid values for ``<tag>``)


.. |downloads_r-tidytacos| image:: https://img.shields.io/conda/dn/bioconda/r-tidytacos.svg?style=flat
   :target: https://anaconda.org/bioconda/r-tidytacos
   :alt:   (downloads)
.. |docker_r-tidytacos| image:: https://quay.io/repository/biocontainers/r-tidytacos/status
   :target: https://quay.io/repository/biocontainers/r-tidytacos
.. _`r-tidytacos/tags`: https://quay.io/repository/biocontainers/r-tidytacos?tab=tags


.. raw:: html

    <script>
        var package = "r-tidytacos";
        var versions = ["1.0.8"];
    </script>






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-----------------

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    :file: ../../templates/package_dashboard.html

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