:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'r-wasabi' .. highlight: bash r-wasabi ======== .. conda:recipe:: r-wasabi :replaces_section_title: :noindex: Prepare Sailfish and Salmon output for downstream analysis :homepage: https://github.com/COMBINE-lab/wasabi :license: BSD-3-clause :recipe: /`r-wasabi `_/`meta.yaml `_ .. conda:package:: r-wasabi |downloads_r-wasabi| |docker_r-wasabi| :versions: .. raw:: html
1.0.1-61.0.1-51.0.1-41.0.1-31.0.1-21.0.1-11.0.1-01.0.0-11.0.0-0 ``1.0.1-6``,  ``1.0.1-5``,  ``1.0.1-4``,  ``1.0.1-3``,  ``1.0.1-2``,  ``1.0.1-1``,  ``1.0.1-0``,  ``1.0.0-1``,  ``1.0.0-0``,  ``0.3-0``,  ``0.2-0``,  ``0.1-0``,  ``0.0.1-0`` .. raw:: html
:depends bioconductor-rhdf5: :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-data.table: :depends r-rjson: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install r-wasabi and update with:: mamba update r-wasabi To create a new environment, run:: mamba create --name myenvname r-wasabi with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/r-wasabi: (see `r-wasabi/tags`_ for valid values for ````) .. |downloads_r-wasabi| image:: https://img.shields.io/conda/dn/bioconda/r-wasabi.svg?style=flat :target: https://anaconda.org/bioconda/r-wasabi :alt: (downloads) .. |docker_r-wasabi| image:: https://quay.io/repository/biocontainers/r-wasabi/status :target: https://quay.io/repository/biocontainers/r-wasabi .. _`r-wasabi/tags`: https://quay.io/repository/biocontainers/r-wasabi?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/r-wasabi/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/r-wasabi/README.html