:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'ra-integrate' .. highlight: bash ra-integrate ============ .. conda:recipe:: ra-integrate :replaces_section_title: :noindex: Integration of the Ra assembler \- a de novo DNA assembler for third generation sequencing data. :homepage: https://github.com/mariokostelac/ra-integrate :license: GPL3 :recipe: /`ra-integrate `_/`meta.yaml `_ .. conda:package:: ra-integrate |downloads_ra-integrate| |docker_ra-integrate| :versions: ``0.1-0`` :depends graphviz: :depends libgcc: :depends ra: :depends ruby: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install ra-integrate and update with:: mamba update ra-integrate To create a new environment, run:: mamba create --name myenvname ra-integrate with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/ra-integrate: (see `ra-integrate/tags`_ for valid values for ````) .. |downloads_ra-integrate| image:: https://img.shields.io/conda/dn/bioconda/ra-integrate.svg?style=flat :target: https://anaconda.org/bioconda/ra-integrate :alt: (downloads) .. |docker_ra-integrate| image:: https://quay.io/repository/biocontainers/ra-integrate/status :target: https://quay.io/repository/biocontainers/ra-integrate .. _`ra-integrate/tags`: https://quay.io/repository/biocontainers/ra-integrate?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ra-integrate/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/ra-integrate/README.html